Packages
C/C++ genomics tools available as WebAssembly modules
samtools
Parse and manipulate .sam
/ .bam
read alignment files
bedtools2
Parse .bed
files and perform complex "genome arithmetic"
bowtie2
Align sequencing reads (.fastq
) files to a reference genome
fastp
Manipulate and evaluate QC of .fastq
files
seqtk
Manipulate and evaluate QC of .fasta
/ .fastq
files
wgsim
Simulate short reads from a reference genome
v2011.10.17seq-align
Align sequences to each other using the Smith-Waterman and Needleman-Wunsch algorithms
v2017.10.18ssw
A SIMD-based implementation of the Smith-Waterman (requires enabling the WebAssembly SIMD flag in browser)
v1.2.4bhtsne
Run the t-SNE dimensionality-reduction algorithm
v2016.08.22